PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0729s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38506.2 Da PI: 10.1412 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.4 | 1.8e-15 | 293 | 331 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ SapurV1A.0729s0020.2.p 293 KGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGDHNHS 331 78*****998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.4E-19 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-17 | 282 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-15 | 283 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-17 | 285 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-12 | 292 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.88 | 293 | 333 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEEVEEAHKA AIESCNRVIG LLCQPKDQVQ GRNLMVETGE TVFKFKRVIS LLSTGLGHGR 60 VRKLKKFRSS LPQNIFLDSP HCKTILAPKP LQMVPPNFLE TPFNDMDAKS KPPVQIAQKM 120 FLENPVLELN SNIRPPLQIA QTKPPPNFQF LQQHQQIQRV LFQQQQQQMK YHVDRVYSRS 180 NSGINLKFDG STCAPTKSST RSFISSLSMD GTVSNLDGDS FHLIGMPHSS DHISQQSRKR 240 CSGKGEDGNA KCASGGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS WRKGYYKCSS 300 LRGCPARKHV ERCLEDPSML IVTYEGDHNH SRLIISSQSA HT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0729s0020.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377445 | 0.0 | GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382812.1 | 0.0 | probable WRKY transcription factor 39 | ||||
Swissprot | Q9SR07 | 1e-112 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | B9MZB9 | 0.0 | B9MZB9_POPTR; WRKY family protein | ||||
STRING | POPTR_0005s05700.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-111 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0729s0020.2.p |
Publications ? help Back to Top | |||
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