PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0729s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 343aa    MW: 38506.2 Da    PI: 10.1412
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0729s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.41.8e-152933312259
                             EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             ++YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  SapurV1A.0729s0020.1.p 293 KGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGDHNHS 331
                             78*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-19238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.6E-17282331IPR003657WRKY domain
SuperFamilySSF1182902.62E-15283331IPR003657WRKY domain
SMARTSM007743.1E-17285332IPR003657WRKY domain
PfamPF031061.8E-12292330IPR003657WRKY domain
PROSITE profilePS5081116.88293333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEVEEAHKA AIESCNRVIG LLCQPKDQVQ GRNLMVETGE TVFKFKRVIS LLSTGLGHGR  60
VRKLKKFRSS LPQNIFLDSP HCKTILAPKP LQMVPPNFLE TPFNDMDAKS KPPVQIAQKM  120
FLENPVLELN SNIRPPLQIA QTKPPPNFQF LQQHQQIQRV LFQQQQQQMK YHVDRVYSRS  180
NSGINLKFDG STCAPTKSST RSFISSLSMD GTVSNLDGDS FHLIGMPHSS DHISQQSRKR  240
CSGKGEDGNA KCASGGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS WRKGYYKCSS  300
LRGCPARKHV ERCLEDPSML IVTYEGDHNH SRLIISSQSA HT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0729s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774450.0GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382812.10.0probable WRKY transcription factor 39
SwissprotQ9SR071e-112WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLB9MZB90.0B9MZB9_POPTR; WRKY family protein
STRINGPOPTR_0005s05700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-111WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]