PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0725s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 344aa MW: 38491 Da PI: 9.2625 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 124 | 179 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhAas+Ggh++DGCgEfmp geegt++++kCaAC+CHRnFHRre + SapurV1A.0725s0010.1.p 124 SVRYRECLKNHAASMGGHVLDGCGEFMPG-GEEGTPETFKCAACECHRNFHRREIDG 179 79**************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-30 | 125 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-22 | 126 | 183 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-29 | 126 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.225 | 127 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 268 | 341 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-18 | 271 | 340 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.616 | 277 | 341 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.6E-27 | 279 | 336 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MELRGQDKET VMPRSLNYNP PNSRDSSSRI PSAPARRDHR HTDSVLPRTL DLEKESLYHD 60 HQQQQQQQLN PQHPACKLAR DLDQSPDPAQ DTAPVATTNG TNTAPTPSRS NSRSPPPTSA 120 SSASVRYREC LKNHAASMGG HVLDGCGEFM PGGEEGTPET FKCAACECHR NFHRREIDGE 180 PQCVANSTLY KNINGKINIR PPPQQLFTSR ASPQSASLHP HHRYNHGTLR AYTTPIAPVM 240 MSFGGGDGGG TAAESSSEDL NMYQSNLQGQ SSVQPLMSRR RFRTRFSEEQ KATMMEFAEK 300 LGWRIQKQDE QEVQQFCSHV GVKRKVFKVW MHNNKQVMKK KQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-21 | 280 | 335 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0725s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148735 | 0.0 | EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383190.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457240.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457241.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457242.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457243.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024457244.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | U5GHR2 | 0.0 | U5GHR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12420.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-52 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0725s0010.1.p |