PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0722s0230.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 726aa    MW: 80069.8 Da    PI: 5.5859
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0722s0230.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1958113156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t+ q++ +e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  SapurV1A.0722s0230.2.p  58 KKRYHRHTQRQIQDMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                             688999***********************************************998 PP
2START216.49.9e-682474661206
                             HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                   START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                             e+a +a++el+++a+a+ep+W       e++n++e+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d + qW++ +   
  SapurV1A.0722s0230.2.p 247 EIAVAAMEELMRMAQAGEPLWIHGEnntEQLNEEEYLRTFTRGIGpkhlgMRSEASRESAVVIMNHVNLVEILMDAN-QWSTIFCgi 332
                             57899******************999****************999********************************.******999 PP

                             ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                   START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                               +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++      + +++++pSg+li+
  SapurV1A.0722s0230.2.p 333 vsRAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPSL----LSKCRRRPSGCLIQ 415
                             99****************************************************************965....688899******** PP

                             EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +++ng+skv+wveh+++++r++++++r+lv+sgla+gak+wv tl+rqce+
  SapurV1A.0722s0230.2.p 416 ELPNGYSKVVWVEHIEVDDRSVQNIYRPLVNSGLAFGAKRWVGTLDRQCER 466
                             *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2239113IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1844115IPR009057Homeodomain-like
PROSITE profilePS5007116.60155115IPR001356Homeobox domain
SMARTSM003891.2E-1756119IPR001356Homeobox domain
CDDcd000861.41E-1758116No hitNo description
PfamPF000464.9E-1758113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
SuperFamilySSF559614.12E-34238468No hitNo description
PROSITE profilePS5084844.647238469IPR002913START domain
CDDcd088756.49E-125242465No hitNo description
PfamPF018526.6E-57247466IPR002913START domain
SMARTSM002342.1E-67247466IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-4346465IPR023393START-like domain
SuperFamilySSF559611.79E-25487717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFQANMFEGH NMFDMAPKSS ENDSSMLKDD DYETKSGTET MEAQSGDDKD PSEQRPKKKR  60
YHRHTQRQIQ DMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKAQHERSE  120
NSILKSENER LRAENNRYKE ALRNASCPNC GGPAALGEMS FDEQHLRIEN VRLREEIDRI  180
SGIAAKYVGK PLSSLSNLSP RFPTRSLDLG VSSFGEQSGF VGEMFGATDL LRSVTGPTEA  240
DKPMIVEIAV AAMEELMRMA QAGEPLWIHG ENNTEQLNEE EYLRTFTRGI GPKHLGMRSE  300
ASRESAVVIM NHVNLVEILM DANQWSTIFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHTDGTWAVV DVSLDSLRPS LLSKCRRRPS GCLIQELPNG  420
YSKVVWVEHI EVDDRSVQNI YRPLVNSGLA FGAKRWVGTL DRQCERLASS MAINIPTGDL  480
CVITTAEGRK SMLKLAERMV MSFCTGVGAS TAHAWTTLST TGSDDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVQSKRM FDFLRDENNR SEWDILSNGG QVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDISAMNI VLSGGDPDYV ALLPSGFAIL  660
PDGPGYGPAG ILDVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV  720
MCDNA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0722s0230.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2787661e-90GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037708.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037709.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037710.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_011037711.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLB9H1F80.0B9H1F8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]