PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0703s0050.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 43890.1 Da PI: 5.7171 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.5 | 3.2e-33 | 264 | 318 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+++gLt++hvkSHLQkYRl SapurV1A.0703s0050.4.p 264 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNIEGLTIYHVKSHLQKYRL 318 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.213 | 261 | 321 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-18 | 262 | 318 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-31 | 263 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-25 | 264 | 319 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-9 | 266 | 317 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-10 | 353 | 375 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MNHHAIASVT KSETSKGATQ PFCSALFPIQ NSFSSKSDCQ SSSTGESSSP CPSPLIRTES 60 LGSPSTMQLS TAQHQMLCLK FGPDSPLSPT SRVQDSKSTF QRSSVFCTSL YLSSSSSSET 120 NRQLGNLPFL PHPPTYSHSV SATDSTKSPL LFSEDLSNQY DEELSDDFMK DIFNLSGNAS 180 EGSFHGMNYT SDNLELTEQL DLQFLSDELD IAITDHGENP RLDEIYGTPE SPSKPATGFA 240 CNQNFPSVDT LSSHPTPGSS TAHKPRMRWT PELHERFVEA VNKLDGAEKA TPKGVLKLMN 300 IEGLTIYHVK SHLQKYRLAK YLPEKKEEKK TSCSEEKKAT SINIEDVKKK GTIQITEALR 360 MQMEVQKQLH EQLEVCYGPH YDYCLVSICF LSEFIP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-28 | 264 | 321 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0703s0050.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031269.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_011031270.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_011031271.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q949U2 | 1e-114 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A1X9IXP0 | 0.0 | A0A1X9IXP0_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0007s15110.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13040.2 | 2e-96 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0703s0050.4.p |
Publications ? help Back to Top | |||
---|---|---|---|
|