PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0703s0050.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 470aa    MW: 51759.6 Da    PI: 6.0041
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0703s0050.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14e-33264318155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+++gLt++hvkSHLQkYRl
  SapurV1A.0703s0050.3.p 264 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNIEGLTIYHVKSHLQKYRL 318
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.213261321IPR017930Myb domain
SuperFamilySSF466893.94E-18262318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-31263319IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-25264319IPR006447Myb domain, plants
PfamPF002491.3E-9266317IPR001005SANT/Myb domain
PfamPF143792.6E-22353398IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MNHHAIASVT KSETSKGATQ PFCSALFPIQ NSFSSKSDCQ SSSTGESSSP CPSPLIRTES  60
LGSPSTMQLS TAQHQMLCLK FGPDSPLSPT SRVQDSKSTF QRSSVFCTSL YLSSSSSSET  120
NRQLGNLPFL PHPPTYSHSV SATDSTKSPL LFSEDLSNQY DEELSDDFMK DIFNLSGNAS  180
EGSFHGMNYT SDNLELTEQL DLQFLSDELD IAITDHGENP RLDEIYGTPE SPSKPATGFA  240
CNQNFPSVDT LSSHPTPGSS TAHKPRMRWT PELHERFVEA VNKLDGAEKA TPKGVLKLMN  300
IEGLTIYHVK SHLQKYRLAK YLPEKKEEKK TSCSEEKKAT SINIEDVKKK GTIQITEALR  360
MQMEVQKQLH EQLEVQRTLQ LRIEEHARYL QKIIEQQNAG SALLSPKSLS SSTNPPKDSE  420
LPPPSPSTVA ESITDLSSPS SKHKATDSDN LEKQTSEKRI RLEEKSEAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-27264321259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0703s0050.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310903.30.0myb family transcription factor PHL6
RefseqXP_024461415.10.0myb family transcription factor PHL6
SwissprotQ949U21e-131PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A2K1ZLT00.0A0A2K1ZLT0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s15110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-111G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]