PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0697s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 555aa MW: 60087.2 Da PI: 8.8849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0697s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SapurV1A.0697s0070.1.p 92 FVCEICKKGFQRDQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	14.3	0.00012	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ SapurV1A.0697s0070.1.p 168 WKCGKCSKRYAVQSDWKAHAKTC 190 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	91	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.7E-6	91	114	No hit	No description
PROSITE profile	PS50157	10.637	92	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	133	163	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-4	156	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.7E-6	163	188	No hit	No description
SMART	SM00355	220	168	188	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MMRSLVFHEQ QKQILQEENM SNLTSASGDQ ASVSSGNRNE TETNYGVQAQ HFAPPAQTQA 60 PVKKKRNLPG NPDPDAEVIA LSPKTLMATN RFVCEICKKG FQRDQNLQLH RRGHNLPWKL 120 KQRTSNEIRK KVYVCPEPNC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC GKCSKRYAVQ 180 SDWKAHAKTC GTREYRCECG TLFSRRDSFV THRAFCDALA EEKARSMAGA TTSQFLSTQP 240 AGSSNPHVVN LQMPQFSGQN LHVFSLKKEQ QSCFRFRPDF PPWLACPPGL GAPGPPHYQS 300 PIDHLSSSSS PSILSTRLGQ EFTPTCQDMS PNPNPSPGPT LPQYHSGPSP HMSATALLQK 360 AAQMGATVSS KPTGLMRPHY HQQQQEQAHV SANADNVSNT NTAGFGLNLS SREELASGGL 420 FLSGSAPFGN KAGPPVVPSG AARSTGAVPP SGSLLTDMMD SLSSASGFED PSFEDALGSS 480 GVLNSTKDVN SSYSTSRTAR NDHGSGSNGG NEGLTIDFLG SRPLSHSDII MSMVGLSNCI 540 NSSHEQQTHK PWQV*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MMRSLVFHEQ QKQILQEENM SNLTSASGDQ ASVSSGNRNE TETNYGVQAQ HFAPPAQTQA  60
PVKKKRNLPG NPDPDAEVIA LSPKTLMATN RFVCEICKKG FQRDQNLQLH RRGHNLPWKL  120
KQRTSNEIRK KVYVCPEPNC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC GKCSKRYAVQ  180
SDWKAHAKTC GTREYRCECG TLFSRRDSFV THRAFCDALA EEKARSMAGA TTSQFLSTQP  240
AGSSNPHVVN LQMPQFSGQN LHVFSLKKEQ QSCFRFRPDF PPWLACPPGL GAPGPPHYQS  300
PIDHLSSSSS PSILSTRLGQ EFTPTCQDMS PNPNPSPGPT LPQYHSGPSP HMSATALLQK  360
AAQMGATVSS KPTGLMRPHY HQQQQEQAHV SANADNVSNT NTAGFGLNLS SREELASGGL  420
FLSGSAPFGN KAGPPVVPSG AARSTGAVPP SGSLLTDMMD SLSSASGFED PSFEDALGSS  480
GVLNSTKDVN SSYSTSRTAR NDHGSGSNGG NEGLTIDFLG SRPLSHSDII MSMVGLSNCI  540
NSSHEQQTHK PWQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-34	164	225	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-34	164	225	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	130	KLKQRTSNEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0697s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212927	0.0	AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBank	AC216467	0.0	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000809.1	0.0	PREDICTED: zinc finger protein NUTCRACKER
Refseq	XP_011000810.1	0.0	PREDICTED: zinc finger protein NUTCRACKER
Swissprot	Q8H1F5	1e-126	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2K2B130	0.0	A0A2K2B130_POPTR; Uncharacterized protein
STRING	POPTR_0003s04470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-124	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0697s0070.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]