PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0693s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 439aa MW: 47947.1 Da PI: 6.4006 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 166 | 219 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ SapurV1A.0693s0070.1.p 166 KKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 219 6899****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.408 | 162 | 221 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 163 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-26 | 166 | 220 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.05E-18 | 166 | 222 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-8 | 168 | 217 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MLAVSPFRNT ATTKDESQEQ MESYSTIVNG DFPDFCDGDL LESIDFDDLF VSINEKDVLP 60 NLEMDPEILA EFSVSGSGGE ESEMNTSVST EKVVEDDRIR RKDEEDKLSS GPGLDSSLSS 120 GGEEIVSQKD EPVVVNPVPG EDGEKGRKPA TQGIRNDSNQ RKRKMKKVDW TPELHRRFVQ 180 AVEQLGVDKA VPSRILELMG IDCLTRHNIA SHLQKYRSHQ KHLLAREAEA ASWSQRRQMY 240 GAAAASGGGG KREMNAWHPP TMGFPPVTPM HHHFGPLHVW GHPSMDQPPM HMWPKQLAHS 300 PSPLPPPPPP TWHHPPPGPP YWHHHAHQRA PNVISPGTPC FPPPLATRFH APPVTGIPPP 360 HAMYKVDPVA GAGAVAGRHN SGPSPFLDFH PSNESVDAAI GDVLSKPWLP LPLGLKPPAT 420 DSVLVALQNQ GVPKIPPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 163 | 217 | 3 | 57 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 164 | QRKRKM |
2 | 159 | 166 | QRKRKMKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0693s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043636.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X1 | ||||
TrEMBL | A0A3N7G708 | 0.0 | A0A3N7G708_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s04720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 9e-73 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0693s0070.1.p |