PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0692s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GeBP | ||||||||
Protein Properties | Length: 382aa MW: 42885.2 Da PI: 8.0611 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 108.7 | 4.2e-34 | 162 | 257 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 lfqrlw+e+Dei+lLqG+idf +++g +p +d+ af++f+k+s +f+vs ql +K+ rL+kKf ++vk k+g++++fsk+hdqk SapurV1A.0692s0010.1.p 162 LFQRLWTEDDEISLLQGIIDFIDEKGFDPLKDTYAFFDFIKQSFHFDVSMAQLKDKVFRLRKKFDNQVKG-KKGENKVFSKPHDQKG 247 79*****************************************************************999.99************** PP DUF573 89 felskkiWgs 98 f+lsk iWgs SapurV1A.0692s0010.1.p 248 FDLSKCIWGS 257 ********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-30 | 163 | 256 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MAPKRAPRVK DPPSASSSEE EEISSGEEEA SDDERSQPSP PQPQTKTIRT RNSTPKKPEP 60 TTHQSESELE SESGSDSESE PEPEPGQSVK RIPSKPMEEI PPKEAAAAAV KKSRSKPAVA 120 ATPEKSTAVK RGNGADRDPK DLKRAKNKQS DPEKSDDSKK QLFQRLWTED DEISLLQGII 180 DFIDEKGFDP LKDTYAFFDF IKQSFHFDVS MAQLKDKVFR LRKKFDNQVK GKKGENKVFS 240 KPHDQKGFDL SKCIWGSEGC IKAIGKKNTN FNDNKKRNSK KLEALKADLG IDAGEERMEV 300 EMERNSSVKK VLKFDRKASV GTMEDYVARC GLDFAHGVKK EEMEEKWRKL HIAELELFLK 360 RNELLGEQGK IMLSALTADK D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0692s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145118 | 0.0 | EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313912.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | B9HMZ5 | 0.0 | B9HMZ5_POPTR; GeBP family protein | ||||
STRING | POPTR_0009s09150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 9e-34 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0692s0010.1.p |