PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0689s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 58914.7 Da PI: 6.9992 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 171 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g SapurV1A.0689s0070.1.p 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.7 | 6.8e-14 | 263 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g SapurV1A.0689s0070.1.p 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 313 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-9 | 171 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-15 | 171 | 229 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-16 | 172 | 228 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 172 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-11 | 172 | 229 | No hit | No description |
PROSITE profile | PS51032 | 17.53 | 172 | 228 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.07E-25 | 263 | 323 | No hit | No description |
Pfam | PF00847 | 1.4E-9 | 263 | 313 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-17 | 263 | 323 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-16 | 264 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-31 | 264 | 327 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 264 | 321 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 265 | 276 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 303 | 323 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MWNLNDSPDQ ARDDESEGCS SQKTSIDGED DKGKRVGSVS NSSSSAVVIE DGSEEEDAVG 60 EKGNKIIKKR SMSFSSSKIF GFSVPYDQDS VDMSDPPVTR QFFPLEDQEM GSTSGGGGSF 120 GGGDGVGGGF PRAHWVGVKF CQSESSFASQ KSMEVSQPLK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFRIE DYEEDLKQMS 240 NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA 300 ARAYDKAAIK CNGKEAVTNF DPSIYANELN SIESSGNAAD HSLDLSLGNP ASKQNSVEFG 360 EDRHNVAMDP ATMPSEPNWQ NQGLRPKQLN LHRSNNDGHG RDGYGETETT QLLSKIHIQS 420 QASLKSSEMP RFEQQQFRSQ GDSQMNPFLP PQFNSPNYQI QYPSSSNGGR IGSDLSLTPA 480 ELHYRHHYQQ WQAGPPQFAN AAASSGFQQQ IRTPQNWLQK NGFNSLMRPS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0689s0070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC477295 | 0.0 | KC477295.1 Populus tomentosa AP2-1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310715.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 1e-130 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | B9HH99 | 0.0 | B9HH99_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s10780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-122 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0689s0070.1.p |