PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0684s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 41366.2 Da PI: 6.7861 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.5e-21 | 174 | 224 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge SapurV1A.0684s0120.1.p 174 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 224 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.15E-34 | 173 | 233 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 174 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-38 | 174 | 237 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-23 | 174 | 232 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 174 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 175 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 175 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 197 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSAAIDIYSA PVQAFSDPCR EELMKALEPF MKSASPSPTS TSYSSPSPST SSPSFSSYPP 60 CFYSNNSPIS SYPNLDLSFC SPTSTQMFSN GFLDYSQMGY EQTGPIGLNH LTPSQILQIQ 120 AKIHLQQQQQ QQKMENVAAT PQFVHNQRAS NFLAPKAVPM KQSAASSPHK PTKLYRGVRQ 180 RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF PHLRHQGAHV 240 SGEFGDYKPL HSSVDAKLQA ICQSLGLQKQ GKSREPCSAA NSKKTAPATL QAKIEDDCSL 300 KGALKTEYEN FGVEDYKVEM PSPSPASSDE SLAGSSSPES EISFLDFSDS LQRDEFENFG 360 LEKYPSVEID WSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 173 | 231 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0684s0120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF597499 | 0.0 | EF597499.1 Populus euphratica dehydrate responsive element-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307098.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | B9H544 | 0.0 | B9H544_POPTR; ERF family protein | ||||
STRING | POPTR_0005s07900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-56 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0684s0120.1.p |