PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0682s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 293aa    MW: 32930.4 Da    PI: 10.0962
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0682s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.91e-43131452133
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssas 83 
                              +kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+skt++WLl+ +k ai el ++      +s++++cea s+s   +
  SapurV1A.0682s0140.1.p  13 SAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASKTLDWLLTRSKNAIEELEKNgggkcLFSPSTNCEALSESGDLE 99 
                             579*************************************************************99998778888885554444444 PP

                     TCP  84 nsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                 ++  ++ ++++ ++ ++ ++  lakesrakar+rarertr k + +
  SapurV1A.0682s0140.1.p 100 ----DRVLSEIQEQRMKKMQTIAVDLLAKESRAKARERARERTRVKLSAR 145
                             ....3333333344555555555688999***************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3814141IPR005333Transcription factor, TCP
PROSITE profilePS5136935.9291573IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.241124141IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
LYNRSHFLAG KKSAKKDRHS KIYTAQGLRD RRVRLSIEIA RKFFDLQDML GFDKASKTLD  60
WLLTRSKNAI EELEKNGGGK CLFSPSTNCE ALSESGDLED RVLSEIQEQR MKKMQTIAVD  120
LLAKESRAKA RERARERTRV KLSARRLHET VKCPDFSSSC LKLPSSLNQH QSCEKSSSYN  180
ATCSIKVVSH GQAEDPSSHH SLANQSAKGD IIEESVVMTR KLKPSAPMGY HQNLRMLKDA  240
SCNRRSSSYL PNLAQNWDIS SVVAHSSFRP ITISNQPTEI QLSGKLWGTE YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-132073154Putative transcription factor PCF6
5zkt_B1e-132073154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0682s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444205.11e-155transcription factor CYCLOIDEA
TrEMBLA0A2K1X6G01e-154A0A2K1X6G0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13980.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-29TCP family protein