PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0680s0090.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 338aa MW: 37742.2 Da PI: 6.5832 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 32.5 | 1.9e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl SapurV1A.0680s0090.5.p 1 MKHMGIPGLTLYHLKSHLQKYRL 23 799*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.2E-24 | 69 | 113 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MKHMGIPGLT LYHLKSHLQK YRLSKNLHGQ VNVGSSKTGS VAVVGDRMPE VNATHININN 60 LSIGSQPNNE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG KYLQAVLEKA QETLGRQNLG 120 SVGLEATKVQ LSELVSKVST QCLNSTFSEL KDLQGLCSHQ IQPSQPNDCS VDSCLTSCEG 180 SQKEQEMHNT GMGLRPYNSN ALLEPKEISE EHALQQTELK WGEYQRDNKM FLTSIGPETG 240 RRTFSAERSC SDLSIGVGRQ GEKGNISSSF AEVRFKEDDS FQDQTNKRAD SVKFENEKLS 300 PGYRLSYFTT KLDLNSHDEI DAASNCKQLD LNGFSWN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0680s0090.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438958.1 | 0.0 | myb-related protein 2 isoform X4 | ||||
Swissprot | Q9SQQ9 | 1e-107 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2K1Y1Q1 | 0.0 | A0A2K1Y1Q1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-109 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0680s0090.5.p |
Publications ? help Back to Top | |||
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