PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0680s0090.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 343aa MW: 38327.9 Da PI: 6.7883 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 32.5 | 1.9e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl SapurV1A.0680s0090.4.p 1 MKHMGIPGLTLYHLKSHLQKYRL 23 799*******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 8.0E-25 | 72 | 118 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MKHMGIPGLT LYHLKSHLQK YRLSKNLHGQ VNVGSSKTGS VAVVGDRMPE VNATHININN 60 LSIGSQPNKS LHFSEALQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA VLEKAQETLG 120 RQNLGSVGLE ATKVQLSELV SKVSTQCLNS TFSELKDLQG LCSHQIQPSQ PNDCSVDSCL 180 TSCEGSQKEQ EMHNTGMGLR PYNSNALLEP KEISEEHALQ QTELKWGEYQ RDNKMFLTSI 240 GPETGRRTFS AERSCSDLSI GVGRQGEKGN ISSSFAEVRF KEDDSFQDQT NKRADSVKFE 300 NEKLSPGYRL SYFTTKLDLN SHDEIDAASN CKQLDLNGFS WN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0680s0090.4.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438956.1 | 0.0 | myb-related protein 2 isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-109 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2K1Y1P4 | 0.0 | A0A2K1Y1P4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.2 | 1e-112 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0680s0090.4.p |
Publications ? help Back to Top | |||
---|---|---|---|
|