PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0680s0090.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 343aa MW: 38327.9 Da PI: 6.7883

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0680s0090.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32.5	1.9e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl SapurV1A.0680s0090.3.p 1 MKHMGIPGLTLYHLKSHLQKYRL 23 799*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-9	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	8.0E-25	72	118	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MKHMGIPGLT LYHLKSHLQK YRLSKNLHGQ VNVGSSKTGS VAVVGDRMPE VNATHININN 60 LSIGSQPNKS LHFSEALQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA VLEKAQETLG 120 RQNLGSVGLE ATKVQLSELV SKVSTQCLNS TFSELKDLQG LCSHQIQPSQ PNDCSVDSCL 180 TSCEGSQKEQ EMHNTGMGLR PYNSNALLEP KEISEEHALQ QTELKWGEYQ RDNKMFLTSI 240 GPETGRRTFS AERSCSDLSI GVGRQGEKGN ISSSFAEVRF KEDDSFQDQT NKRADSVKFE 300 NEKLSPGYRL SYFTTKLDLN SHDEIDAASN CKQLDLNGFS WN*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MKHMGIPGLT LYHLKSHLQK YRLSKNLHGQ VNVGSSKTGS VAVVGDRMPE VNATHININN  60
LSIGSQPNKS LHFSEALQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA VLEKAQETLG  120
RQNLGSVGLE ATKVQLSELV SKVSTQCLNS TFSELKDLQG LCSHQIQPSQ PNDCSVDSCL  180
TSCEGSQKEQ EMHNTGMGLR PYNSNALLEP KEISEEHALQ QTELKWGEYQ RDNKMFLTSI  240
GPETGRRTFS AERSCSDLSI GVGRQGEKGN ISSSFAEVRF KEDDSFQDQT NKRADSVKFE  300
NEKLSPGYRL SYFTTKLDLN SHDEIDAASN CKQLDLNGFS WN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0680s0090.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438956.1	0.0	myb-related protein 2 isoform X2
Swissprot	Q9SQQ9	1e-109	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2K1Y1P4	0.0	A0A2K1Y1P4_POPTR; Uncharacterized protein
STRING	POPTR_0013s05670.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.2	1e-112	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0680s0090.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]