PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0680s0090.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 415aa MW: 46266.7 Da PI: 7.1725

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0680s0090.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+++AtPkt++++m+++gLtl+h+kSHLQkYRl SapurV1A.0680s0090.2.p 46 KPRLKWTPDLHERFIEAVNQLGGADRATPKTVMKHMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.624	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.24E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-24	146	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHHQHQGK SIHSSSRMAI HPDRHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD RATPKTVMKH MGIPGLTLYH LKSHLQKYRL SKNLHGQVNV GSSKTGSVAV 120 VGDRMPEVNA THININNLSI GSQPNNEALQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL 180 QAVLEKAQET LGRQNLGSVG LEATKVQLSE LVSKVSTQCL NSTFSELKDL QGLCSHQIQP 240 SQPNDCSVDS CLTSCEGSQK EQEMHNTGMG LRPYNSNALL EPKEISEEHA LQQTELKWGE 300 YQRDNKMFLT SIGPETGRRT FSAERSCSDL SIGVGRQGEK GNISSSFAEV RFKEDDSFQD 360 QTNKRADSVK FENEKLSPGY RLSYFTTKLD LNSHDEIDAA SNCKQLDLNG FSWN*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHHQHQGK SIHSSSRMAI HPDRHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD RATPKTVMKH MGIPGLTLYH LKSHLQKYRL SKNLHGQVNV GSSKTGSVAV  120
VGDRMPEVNA THININNLSI GSQPNNEALQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL  180
QAVLEKAQET LGRQNLGSVG LEATKVQLSE LVSKVSTQCL NSTFSELKDL QGLCSHQIQP  240
SQPNDCSVDS CLTSCEGSQK EQEMHNTGMG LRPYNSNALL EPKEISEEHA LQQTELKWGE  300
YQRDNKMFLT SIGPETGRRT FSAERSCSDL SIGVGRQGEK GNISSSFAEV RFKEDDSFQD  360
QTNKRADSVK FENEKLSPGY RLSYFTTKLD LNSHDEIDAA SNCKQLDLNG FSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0680s0090.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024438958.1	0.0	myb-related protein 2 isoform X4
Swissprot	Q9SQQ9	1e-156	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2K1Y1Q1	0.0	A0A2K1Y1Q1_POPTR; Uncharacterized protein
STRING	POPTR_0013s05670.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-158	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0680s0090.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]