PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0675s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23300.3 Da    PI: 8.7712
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0675s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.26.8e-26958150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien+  rqvtf+kRr g+lKKA+ELSvLCdae+ v ifs +gklye +
  SapurV1A.0675s0070.1.p  9 KRIENSVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 58
                            79*********************************************965 PP
2K-box62.91.2e-219117516100
                   K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                               ++e++kLk+eie Lq+ +R + G +  ++sl eL ++e++Le  +++iRs K+e++l++i+ l++ke  l+ +n++L+ k++e
  SapurV1A.0675s0070.1.p  91 DAKEEINKLKQEIEVLQKGLRYMFGGNAAEMSLDELIEIEKHLEIWIEQIRSIKMEIMLKEIQLLRNKEGILKAANQYLQDKVKE 175
                             5789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-28175IPR002100Transcription factor, MADS-box
CDDcd002652.48E-39278No hitNo description
PRINTSPR004042.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.89589179IPR002487Transcription factor, K-box
PfamPF014861.4E-2191173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARGKVQMKR IENSVHRQVT FCKRRSGLLK KAKELSVLCD AEIGVFIFSA HGKLYELATK  60
GTMQGLIERY MKCSRGAQPE PAAIETQPDM DAKEEINKLK QEIEVLQKGL RYMFGGNAAE  120
MSLDELIEIE KHLEIWIEQI RSIKMEIMLK EIQLLRNKEG ILKAANQYLQ DKVKENIVIT  180
NLEPMTTNIP YPLTIENKIF QY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15198190MEF2C
5f28_B3e-15198190MEF2C
5f28_C3e-15198190MEF2C
5f28_D3e-15198190MEF2C
6byy_A2e-15190184MEF2 CHIMERA
6byy_B2e-15190184MEF2 CHIMERA
6byy_C2e-15190184MEF2 CHIMERA
6byy_D2e-15190184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0675s0070.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5189140.0DQ518914.1 Populus tomentosa MADS box transcription factor (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376144.21e-134agamous-like MADS-box protein AGL12 isoform X1
SwissprotQ388412e-84AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2K1Y3T01e-132A0A2K1Y3T0_POPTR; Uncharacterized protein
STRINGXP_002526423.11e-110(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-87AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]