PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0674s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 385aa    MW: 43367.7 Da    PI: 5.9866
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0674s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-072670240
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  SapurV1A.0674s0030.1.p 26 QKRLCDYCNDATALLYCRADSAKLCFSCDHEVHSTnqlfskHTRS 70
                            6789*****************************668888888875 PP
2zf-B_box21.35.5e-0771104438
                zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38 
                               C+ ++  +++lfCe+ ++ +C++C  e H +H+
  SapurV1A.0674s0030.1.p  71 LLCDACHASPVSLFCETEHSVFCQNCDWERH-SHS 104
                             57****************************9.664 PP
3CCT56.51e-19340382143
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                             R+ a++RYkeK+ktR+++K+irYesRK +AesR R++GrF+k 
  SapurV1A.0674s0030.1.p 340 RDSAVSRYKEKKKTRRYNKRIRYESRKLRAESRTRIRGRFAKM 382
                             899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-132572IPR000315B-box-type zinc finger
PROSITE profilePS5011910.312572IPR000315B-box-type zinc finger
PfamPF006431.7E-52670IPR000315B-box-type zinc finger
CDDcd000211.93E-62872No hitNo description
PROSITE profilePS5011910.05468115IPR000315B-box-type zinc finger
PfamPF006433.4E-571114IPR000315B-box-type zinc finger
CDDcd000211.26E-472100No hitNo description
SMARTSM003360.1373115IPR000315B-box-type zinc finger
PfamPF062038.4E-15340382IPR010402CCT domain
PROSITE profilePS5101714.872340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLKSQYQQQQ EPEHLTAAIM KPRLLQKRLC DYCNDATALL YCRADSAKLC FSCDHEVHST  60
NQLFSKHTRS LLCDACHASP VSLFCETEHS VFCQNCDWER HSHSSLSSTH IRRPIEGFNG  120
CPSGNDLMTI LGLEDLGLKK SLFFSEESDG FTGSELDNGY LDLFVWDSPS VCIDDLIVSS  180
DSGSSFQALE VPPLPKNRNA ACGQHKEEIL CQLRELVSMK PDPYGNADID PVNIYLSLDA  240
DPQPPNLKTI GDPGAFASYE ENLPVWLAYY GEAANHVFFS STLPRSNFEE SCAVPDKELN  300
IIGSTSHIHD DHEAMPQPLT IETLPVLPNA VAHDMNSQER DSAVSRYKEK KKTRRYNKRI  360
RYESRKLRAE SRTRIRGRFA KMDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0674s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389672.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLU7E1V50.0U7E1V5_POPTR; Uncharacterized protein
STRINGPOPTR_0020s00320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-92B-box type zinc finger protein with CCT domain