PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0670s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SRS | ||||||||
Protein Properties | Length: 204aa MW: 22453.3 Da PI: 8.6435 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 179.6 | 1.3e-55 | 9 | 141 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 g+++CqdCGnq+kkdC ++RCRtCCks+gf+C+thvkstWvpa++rr+r q+ + ++++ +++k+kr SapurV1A.0670s0180.1.p 9 GGSRCQDCGNQSKKDCFYMRCRTCCKSKGFQCQTHVKSTWVPAYRRRQRAQTVSPVQQQQLL---GQNPKSKR-------------- 78 6789********************************************97766655333322...22222222.............. PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l ++++++ le++++P+ev+s+a frc rvss+d++ ++laYqt+v+igGhvfkGiLydqG+e+ SapurV1A.0670s0180.1.p 79 L-RENPSTGLEIENFPAEVDSTATFRCFRVSSIDEAVDQLAYQTSVNIGGHVFKGILYDQGPEN 141 1.233456789999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.4E-58 | 10 | 140 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.6E-27 | 13 | 54 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.6E-24 | 92 | 139 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MMRPAGSLGG SRCQDCGNQS KKDCFYMRCR TCCKSKGFQC QTHVKSTWVP AYRRRQRAQT 60 VSPVQQQQLL GQNPKSKRLR ENPSTGLEIE NFPAEVDSTA TFRCFRVSSI DEAVDQLAYQ 120 TSVNIGGHVF KGILYDQGPE NRYDFGETSC RELHQEPNLT NAGALTPALA STSGAAESLA 180 PPSYSFPLNA FMSGTQLFLH PKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0670s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313022.3 | 1e-127 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 5e-60 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A3N7FNC2 | 1e-126 | A0A3N7FNC2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s12450.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-62 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0670s0180.1.p |
Publications ? help Back to Top | |||
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