PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0666s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 429aa    MW: 47333.7 Da    PI: 6.8752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0666s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-21109179167
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                             f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++
  SapurV1A.0666s0090.1.p 109 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWTFRYSYWNSSQSYVMTKGWSR 179
                             89****************************66677899*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-30103180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21106179IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-18107179No hitNo description
PfamPF023627.6E-19109179IPR003340B3 DNA binding domain
SMARTSM010196.1E-8109196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEFGSGFSEE DQMGRGKGLP FSSYSPPSSS SSHQKNQPVV PLGQIYENHQ MGSWLGSKYD  60
QEDQDTSRFN ESTGASTAAK LDLMDVNDEE EEGSRGESSC VVIEKEHMFD KVVTPSDVGK  120
LNRLVIPKQH AEKYFPLDSS SNEKGLLLNF EDRNGKAWTF RYSYWNSSQS YVMTKGWSRV  180
GELGRDRLYI DWRRRPDAPD HASHHQLYHH NHPFSSIPWS PLLMRPPTAP ILPRDHLHLS  240
NPNRNAYYNV GGSSYGHGYG NYNNVANPCL SSGSVFYMRS SAGAAAAAEP TPQQVGMGMV  300
QWQLGEGSIV EPMVYESVPV VQGKAAAKRL RLFGVNMDCP ITDQSDKYDR KFSSASAAAA  360
PAPALPHNDT IALQPTPQLA SPSLQHPLHQ LRLYRGTPLP AMPPSTTQFL HKGKSSSPSS  420
SMSLDLDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-491041963114B3 domain-containing transcription factor NGA1
5os9_B2e-491041963114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0666s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467437.10.0B3 domain-containing protein Os03g0120900
SwissprotO827991e-58NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2K1YKK40.0A0A2K1YKK4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-52B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]