PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0665s0040.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-X1
Protein Properties Length: 961aa    MW: 104387 Da    PI: 8.4582
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0665s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31e-05344361118
                zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                             CG+H C ++CH+GpC+ C
  SapurV1A.0665s0040.2.p 344 CGNHMCDETCHPGPCGDC 361
                             ****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.77E-6106173No hitNo description
PROSITE profilePS500168.627110171IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.347113169IPR001841Zinc finger, RING-type
PROSITE patternPS013590113168IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.086225243IPR000967Zinc finger, NF-X1-type
PfamPF014224.1227242IPR000967Zinc finger, NF-X1-type
CDDcd060081.18E-9270318No hitNo description
SMARTSM004380.001280299IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017282298IPR000967Zinc finger, NF-X1-type
CDDcd060082.51E-9334377No hitNo description
PfamPF014227.2E-4344361IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001344363IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-11392440No hitNo description
PfamPF014222.6E-4402419IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013402421IPR000967Zinc finger, NF-X1-type
PfamPF0142215460471IPR000967Zinc finger, NF-X1-type
SMARTSM00438250460494IPR000967Zinc finger, NF-X1-type
PfamPF01422150524540IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15524542IPR000967Zinc finger, NF-X1-type
PfamPF014220.27577592IPR000967Zinc finger, NF-X1-type
SMARTSM004380.68577607IPR000967Zinc finger, NF-X1-type
SMARTSM004380.42616637IPR000967Zinc finger, NF-X1-type
PfamPF014246.5E-5748812IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MSFQPRNDRR DNNNKNNRSS RFPTQKWVPR GGNSNPAVDA NTNPLSSSNS RYNVNGGDGA  60
AHGWPGTTQP RGHVGQPRKG IEKSEKTRES SDPNLPQLAQ DIQGKLVKST VECMICYDMV  120
RRSVPIWSCS SCFSIFHLKC IKKWARAPTS VDLATEKNQG FNWRCPGCQS VQLTALMDIQ  180
YICFCGKRRD PPSDLYLTPH SCGEPCGKPL EKEAPGADRS KEDLCPHNCV LQCHPGPCPS  240
CKAFAPPRMC PCGKKIITTR CADRMSVLTC GQSCDKLLEC WRHRCERICH VGPCDSCRVS  300
VSASCFCKKK MKVVLCGDLA VKGEVKAEDG VFSCNATCGK MLDCGNHMCD ETCHPGPCGD  360
CELMPARVGS CHCGKTSLQK ERKSCLDPIP KCTQICGKSL PCGMHRCKGV CHSGDCALCL  420
VFVTQKCRCG STSQTVECYK TTSENEKFMC EKPCGRKKNC GRHRCSQRCC PLSNSNSQLS  480
GDWDPHFCQM ACGKKLRRTS VPPPLPCGTP PPSCQLPCSV PQPCGHPASH GCHFGDCPSC  540
LVPVNKECVG GHVILGNIPC GSSNIRCNKL CGKTRQCGLH ACGRTCHSLP CDTSFGNENG  600
TRASCGQTCG APKRDCKHTC TARCHPRTPC PDVRCEFLVT ISCSCGRMTA SVPCDAGGSD  660
GGYNDNVLEA SILHKLPASL QPVESNGKKI PLGQRKLMCV DECAKLERKR VLANAFDIAP  720
PNLEALHFGE NSAVTELIGD LYRRDPKWVL AVEERCKYLV LGKSRGTTSG LKIHVFCPML  780
KDKRDAVRLI AERWRLAIYS AGWEPKRFIV VHPTPKSKPP PRVIGIKGAT TSISHPPVFD  840
VLVDLDPRLV VTFLDLPREA DISSLVLRFG GECELVRFND KNALAVFNDP ARAATAMRRL  900
DHGSLYHGAS VVPQNTGASL ASPAYNACAV AGTAMEGADA ALKGTSWKKA VVQESGCRKD  960
*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0665s0040.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321572.30.0NF-X1-type zinc finger protein NFXL1
RefseqXP_024442669.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3N7G0180.0A0A3N7G018_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05030.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1