PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0665s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-X1
Protein Properties Length: 992aa    MW: 107726 Da    PI: 8.3478
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0665s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31.1e-05344361118
                zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                             CG+H C ++CH+GpC+ C
  SapurV1A.0665s0040.1.p 344 CGNHMCDETCHPGPCGDC 361
                             ****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.12E-6106173No hitNo description
PROSITE profilePS500168.627110171IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.347113169IPR001841Zinc finger, RING-type
PROSITE patternPS013590113168IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.086225243IPR000967Zinc finger, NF-X1-type
PfamPF014224.3227242IPR000967Zinc finger, NF-X1-type
CDDcd060082.01E-9270318No hitNo description
SMARTSM004380.001280299IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017282298IPR000967Zinc finger, NF-X1-type
CDDcd060084.51E-9334377No hitNo description
PfamPF014227.4E-4344361IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001344363IPR000967Zinc finger, NF-X1-type
CDDcd060086.97E-11392440No hitNo description
PfamPF014222.7E-4402419IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013402421IPR000967Zinc finger, NF-X1-type
PfamPF0142215460471IPR000967Zinc finger, NF-X1-type
SMARTSM00438250460494IPR000967Zinc finger, NF-X1-type
CDDcd060085.10E-6488531No hitNo description
PfamPF014227.4E-4498515IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0047498517IPR000967Zinc finger, NF-X1-type
PfamPF01422120555571IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15555573IPR000967Zinc finger, NF-X1-type
PfamPF014220.28608623IPR000967Zinc finger, NF-X1-type
SMARTSM004380.68608638IPR000967Zinc finger, NF-X1-type
SMARTSM004380.42647668IPR000967Zinc finger, NF-X1-type
PfamPF014246.8E-5779843IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MSFQPRNDRR DNNNKNNRSS RFPTQKWVPR GGNSNPAVDA NTNPLSSSNS RYNVNGGDGA  60
AHGWPGTTQP RGHVGQPRKG IEKSEKTRES SDPNLPQLAQ DIQGKLVKST VECMICYDMV  120
RRSVPIWSCS SCFSIFHLKC IKKWARAPTS VDLATEKNQG FNWRCPGCQS VQLTALMDIQ  180
YICFCGKRRD PPSDLYLTPH SCGEPCGKPL EKEAPGADRS KEDLCPHNCV LQCHPGPCPS  240
CKAFAPPRMC PCGKKIITTR CADRMSVLTC GQSCDKLLEC WRHRCERICH VGPCDSCRVS  300
VSASCFCKKK MKVVLCGDLA VKGEVKAEDG VFSCNATCGK MLDCGNHMCD ETCHPGPCGD  360
CELMPARVGS CHCGKTSLQK ERKSCLDPIP KCTQICGKSL PCGMHRCKGV CHSGDCALCL  420
VFVTQKCRCG STSQTVECYK TTSENEKFMC EKPCGRKKNC GRHRCSQRCC PLSNSNSQLS  480
GDWDPHFCQM ACGKKLRCGQ HSCDDLCHSG HCSPCLETIF TDLTCACRRT SVPPPLPCGT  540
PPPSCQLPCS VPQPCGHPAS HGCHFGDCPS CLVPVNKECV GGHVILGNIP CGSSNIRCNK  600
LCGKTRQCGL HACGRTCHSL PCDTSFGNEN GTRASCGQTC GAPKRDCKHT CTARCHPRTP  660
CPDVRCEFLV TISCSCGRMT ASVPCDAGGS DGGYNDNVLE ASILHKLPAS LQPVESNGKK  720
IPLGQRKLMC VDECAKLERK RVLANAFDIA PPNLEALHFG ENSAVTELIG DLYRRDPKWV  780
LAVEERCKYL VLGKSRGTTS GLKIHVFCPM LKDKRDAVRL IAERWRLAIY SAGWEPKRFI  840
VVHPTPKSKP PPRVIGIKGA TTSISHPPVF DVLVDLDPRL VVTFLDLPRE ADISSLVLRF  900
GGECELVRFN DKNALAVFND PARAATAMRR LDHGSLYHGA SVVPQNTGAS LASPAYNACA  960
VAGTAMEGAD AALKGTSWKK AVVQESGCRK D*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0665s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321572.30.0NF-X1-type zinc finger protein NFXL1
RefseqXP_024442669.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3N7G0180.0A0A3N7G018_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1