PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0650s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 361aa MW: 39585.3 Da PI: 8.5657 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 3.9e-32 | 69 | 122 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ SapurV1A.0650s0140.2.p 69 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMYRS 122 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.706 | 65 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 65 | 124 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-15 | 67 | 124 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 69 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-9 | 70 | 121 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKGSDSLVEG SESSCSDKKV EQDEGDEEVD GASFKSKNEG ESTSNSSIEE NKTKAANGSF 60 RRYNRSKMPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QMMNIKGLSI AHVKSHLQMY 120 RSRRSDDPIQ GGDSHICNLR QLAMLQNNFN QRSPCNLRYG DGSWRGHDHM MRGAYIGGTA 180 LNRVKHGLYG SVTGCNSHNS LNYGSSVHIP SLNGKATGRT LQSLEGVKLF PVSRQNESTA 240 SSMESDFITK LQERSGMLDQ VECLKASSSA DKNWRSTIQE MQKGLKRKTL DRDCNLDLNL 300 SLKLAANGDG ELEKSVEGCE VDGALSLSLS SSSFSKLGRS MEGDGSRKHA RMASTLDLTL 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 70 | 124 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0650s0140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462567.1 | 0.0 | uncharacterized protein LOC7472443 | ||||
TrEMBL | B9HHT8 | 0.0 | B9HHT8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s07170.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-45 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0650s0140.2.p |