PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0631s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 237aa MW: 25952.8 Da PI: 5.7513

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0631s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.2	2.1e-16	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +ps++e ++ k l ++ +++V++WFqNrR + ++ SapurV1A.0631s0110.1.p 24 RSRWTPKPEQILILESIFNSgMVNPSKNETVRIRKLLenfgSVGDSNVFYWFQNRRSRSRR 84 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.6	6.4e-34	23	85	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d NVfyWFQNr++R+r++ SapurV1A.0631s0110.1.p 23 VRSRWTPKPEQILILESIFNSGMVNPSKNETVRIRKLLENFGSVGDSNVFYWFQNRRSRSRRR 85 589**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-14	19	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.001	20	85	IPR001356	Homeobox domain
SMART	SM00389	5.4E-7	22	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-9	23	90	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-14	24	84	IPR001356	Homeobox domain
CDD	cd00086	0.00404	24	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEDNQDPGCN SPSNHGAERS QPVRSRWTPK PEQILILESI FNSGMVNPSK NETVRIRKLL 60 ENFGSVGDSN VFYWFQNRRS RSRRRRRQMQ ASIVEGDQRN KQPEYDSRGA IQYEGGGTST 120 GLANSPSVNP PYSYLAGSSS SCGVVGEDHG VESLFSFPNQ MGFQELNYQT AGFITVFING 180 VPAEVPSGPL DVKAMFGQDF MLVNSSGVPV PTDESGFSAQ ILRHGESYFL VNISGV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0631s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446658.1	1e-118	WUSCHEL-related homeobox 11
Swissprot	Q8GY25	1e-53	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A3N7HC83	1e-117	A0A3N7HC83_POPTR; Uncharacterized protein
STRING	POPTR_0013s06310.1	1e-105	(Populus trichocarpa)
STRING	POPTR_0019s05730.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-55	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	SapurV1A.0631s0110.1.p

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]