PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0631s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 481aa MW: 52282 Da PI: 7.1399 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.3e-38 | 100 | 159 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ SapurV1A.0631s0100.1.p 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTVRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 92 | 157 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.9E-32 | 102 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.574 | 104 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 106 | 142 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MKGDSKDPAF KLFGRQIPVP DTQFPAETLA KGSCGDITKL ETKGPSEENS EKPEILSVLG 60 QGEEEMPAAM QVNETEVIAK PMEGQLEANG TDKERVFKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGTVRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN 180 SDSAGHQLPS SVESATTLRP STTNGMVLKF GPEAPLCDSM ETVLNLGDPK RYEMSSVNYQ 240 DNGEEPPSCG SSKAASIVRE NELPENITKE QVDLPASSNN LGAPHSLHCY PVPSWVFPRN 300 PAWNNVTSMA AAQHSSGQAC ITNVPTQVQL CPTPMVAVPS ICPLNIPLQF VPASYWGCMP 360 TWTAGTGNVP LTSCCSGNGS SPKLGKHSRD SKFMDEEKTE KCILVPKTLR IDDPSAASKS 420 QWTTFGLPPN QKDPTSKVTI FKNLETRAEG RGRGHVSDAI NVLEVNPAAL SRSHTFQESG 480 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0631s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325441.2 | 0.0 | cyclic dof factor 3 isoform X1 | ||||
TrEMBL | A0A2K1WPB4 | 0.0 | A0A2K1WPB4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s05720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 6e-60 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0631s0100.1.p |