PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0629s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 576aa    MW: 64836.3 Da    PI: 6.1443
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0629s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.7e-25199252155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r++W+ eLH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  SapurV1A.0629s0180.1.p 199 KARVVWSVELHQKFVKAVNQI-GFDKVGPKKILDLMNVPRLTRENVASHLQKYRL 252
                             68*******************.9*******************************8 PP
2Response_reg77.54.9e-26201281109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+p+ +++l+++l+k  y ev+++  ++ al ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++  ge + 
  SapurV1A.0629s0180.1.p  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARHALSLLRERKggYDIVISDVYMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSR 104
                             89*********************.***************999999**********************6644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ ++el++
  SapurV1A.0629s0180.1.p 105 VMKGVQHGACDYLLKPIRMKELRN 128
                             *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.1E-1431523IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-4317151No hitNo description
SuperFamilySSF521728.25E-3517154IPR011006CheY-like superfamily
SMARTSM004484.9E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.15119134IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2320129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.19E-2921134No hitNo description
Gene3DG3DSA:1.10.10.602.5E-28196257IPR009057Homeodomain-like
PROSITE profilePS512949.808196255IPR017930Myb domain
SuperFamilySSF466894.03E-18197256IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22199252IPR006447Myb domain, plants
PfamPF002495.7E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MMENGFSSPR KDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RHALSLLRER  60
KGGYDIVISD VYMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIEILEGI EFQMTRNGSD QYEDGHFLCG EDLTLIKKRK  180
DVESRHDEKD IGDNSSSKKA RVVWSVELHQ KFVKAVNQIG FDKVGPKKIL DLMNVPRLTR  240
ENVASHLQKY RLYLSRLQKE NDFNNPVGMI KQSDSPLSDS TGNFGSQNSV NLQDASNGCY  300
GFSVSSLGVH NVDPRSHDGD RKRLVTAPVA EPKTGLTVDP PNPSKPRNSQ MELGHQLAPP  360
QSEVNFARFD FSFPTKYPWC RIPETQLKQE HNPLHLNDGF SRLPMPGQKQ LSRADHPQPA  420
PAISSATSST ERETGCPVKN KPSHNDYTSN ANHASAVDSS PLQTKTNMTD HQAVMPTSSM  480
ENQGLNMNCL TDLESPRKNI NLGTLPFATL DEDLQVCFVT GDYYMNLGLQ NIEVQEYFDP  540
SLLTGVPTNL DDGLRFDYEI FDPTEYSLID QSLFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-19195257163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0629s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081430.0FN908143.1 Populus x canadensis mRNA for putative B-type response regulator 21 (rr21 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042332.10.0PREDICTED: two-component response regulator ARR11
TrEMBLA0A3Q9EF480.0A0A3Q9EF48_POPTO; Response regulator 11
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-129response regulator 11