PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0625s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 601aa    MW: 66782.5 Da    PI: 7.1566
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0625s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2969152186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++qe+laL+++r++m+ ++r++++k+plWeevs+k++e g++r++k+Ckek+en+ k++k++k+g+ ++  ++ +++++fdql 
  SapurV1A.0625s0070.1.p  69 RWPRQETLALLKIRSDMDVAFRDASAKGPLWEEVSRKLAELGYNRGAKKCKEKFENVYKYHKRTKDGRTGK--QEGKNYRFFDQLA 152
                             8********************************************************************96..55668******96 PP
2trihelix101.37.8e-32427512187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k ev aLi++r++++ +++++  k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  SapurV1A.0625s0070.1.p 427 RWPKVEVEALIRLRTNLDCKYQDNGPKGPLWEEISARMRKIGYNRNAKRCKEKWENINKYFKKVKESKKKR-PEDSKTCPYFHQLDA 512
                             8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006466128IPR001005SANT/Myb domain
PROSITE profilePS500906.72568126IPR017877Myb-like domain
CDDcd122036.36E-2568133No hitNo description
PfamPF138372.7E-1868153No hitNo description
PROSITE profilePS500907.445420484IPR017877Myb-like domain
SMARTSM007170.0088424486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4425483IPR009057Homeodomain-like
CDDcd122031.57E-24426487No hitNo description
PfamPF138379.3E-22426513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MLGNSSSVLA TTTTTPGGGG GGGGGGGGGG GHKEASPLTG ARHEGSSNDV GGEEDKGNIE  60
GDRSFGGNRW PRQETLALLK IRSDMDVAFR DASAKGPLWE EVSRKLAELG YNRGAKKCKE  120
KFENVYKYHK RTKDGRTGKQ EGKNYRFFDQ LAAFESNPPS LSPPLSLPPQ PPEPPSPVVT  180
TIAMPVANHS PNVVGASHST VPSTTLATNM SHGIVTSAIN LTVPPFPSTN PTILFPSLAA  240
NPTNLPPHTN TPSSFPKFSS DLISNSTSSS TSSDAELLGR RKRKRKWKDF FERLMKEVIQ  300
KQEEMQKKFL EAIERREHER MVREESWRMQ EITRINRERE ILAQERSVAA TKDAAVMSFL  360
QKLSEMQNPG QVQNNPPPSQ PPAPPPPISQ PAPAPTPPPP LPQAVANLDI VKSDNGDQNF  420
TSASSSRWPK VEVEALIRLR TNLDCKYQDN GPKGPLWEEI SARMRKIGYN RNAKRCKEKW  480
ENINKYFKKV KESKKKRPED SKTCPYFHQL DALYKEKNKI DVPSSMNPEN SVPLMVQPEQ  540
QWPPPQQEHR PDSEMEDLES DDQQNHDDED DRINMDDEDE DEASGYEIVA NKQTNINEHR  600
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284RRKRKR
2279285RRKRKRK
3280285RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0625s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2276020.0CU227602.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044212.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-147TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K2BEP70.0A0A2K2BEP7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-82Trihelix family protein