PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14301.5 Da PI: 10.1069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.7e-17 | 6 | 101 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 f+k+l++ dv + +++p + ++++ ++e sk++ + d + r+W+++++ rk++ + vl++GW +Fvk++ LkegD v+F+ SapurV1A.0618s0230.1.p 6 FEKTLSKTDVEYR--IRIPMESISAFriP-EEEYSKKVDVFDIHCRRWSFRCSTRKNDPHpkLVLSSGWIRFVKEKSLKEGDQVIFS 89 8999977777765..79******999642.345789****************9988888799************************* PP E-SS.SEE..EE CS B3 84 ldgr.sefelvv 94 ++++ + l + SapurV1A.0618s0230.1.p 90 VSDKdGAEGLQF 101 876535554555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 3 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.73E-17 | 4 | 88 | No hit | No description |
PROSITE profile | PS50863 | 10.546 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.97E-17 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.4E-15 | 6 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-6 | 6 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTRRLFEKTL SKTDVEYRIR IPMESISAFR IPEEEYSKKV DVFDIHCRRW SFRCSTRKND 60 PHPKLVLSSG WIRFVKEKSL KEGDQVIFSV SDKDGAEGLQ FGIQARKRAK LFGQEFWTDP 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455035.1 | 5e-62 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | B9GZ48 | 1e-52 | B9GZ48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00450.1 | 2e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-08 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0230.1.p |