PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14326.4 Da PI: 8.7063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.5e-15 | 6 | 100 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 f+k+l++ dv+ r+ +p + ++++++++e sk++ + d + r+W+++++ rk++ r vl++GW +++k+++LkegD v+F++ SapurV1A.0618s0210.1.p 6 FEKTLSKTDVSY--RMAIPLDSLSAFEIPEEeYSKKVDVFDIDCRRWSFRCSTRKNDPRpkPVLSSGWIQYAKEKRLKEGDRVIFSV 90 899997777776..58*******999544442789****************9988888899*************************7 PP -SS.SEE..E CS B3 85 dgr.sefelv 93 +++ ++ l SapurV1A.0618s0210.1.p 91 SDKdGDEGLE 100 7543444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.27E-16 | 4 | 88 | No hit | No description |
SuperFamily | SSF101936 | 2.75E-15 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.939 | 6 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-12 | 6 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-5 | 6 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTRRLFEKTL SKTDVSYRMA IPLDSLSAFE IPEEEYSKKV DVFDIDCRRW SFRCSTRKND 60 PRPKPVLSSG WIQYAKEKRL KEGDRVIFSV SDKDGDEGLE FEIQARKRLR LFGQELWSDL 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0210.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455035.1 | 6e-58 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | B9GZ48 | 1e-47 | B9GZ48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00450.1 | 2e-48 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 4e-08 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0210.1.p |