PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13943.2 Da PI: 10.2705 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 3.9e-16 | 6 | 103 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvF 82 f+k+l++ dv r+v+p + + ++ +g+ sk++ + d + +W+++++ rk++ + vl++GW +Fvk++gLkegD v+F SapurV1A.0618s0190.1.p 6 FDKTLSKTDVEY--RMVIPMDRLPAFripEGE--FSKKVDVFDNNCCRWSFRCSKRKNDAHpkPVLSSGWIKFVKEKGLKEGDQVIF 88 889997777776..58******9999655433..7899***************8888877799************************ PP EE-SS.SEE..EEEE CS B3 83 kldgr.sefelvvkv 96 +++++ + l +++ SapurV1A.0618s0190.1.p 89 SVSDKdGAGGLQFGI 103 *88655666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-17 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.67E-15 | 4 | 88 | No hit | No description |
PROSITE profile | PS50863 | 10.221 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-16 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0014 | 6 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-13 | 6 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MTKRLFDKTL SKTDVEYRMV IPMDRLPAFR IPEGEFSKKV DVFDNNCCRW SFRCSKRKND 60 AHPKPVLSSG WIKFVKEKGL KEGDQVIFSV SDKDGAGGLQ FGIQARKRVK LFGQDLWSDP 120 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455035.1 | 4e-57 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | B9GZ48 | 4e-48 | B9GZ48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00450.1 | 7e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-07 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0190.1.p |