PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12286.3 Da PI: 9.6992 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.5e-14 | 14 | 87 | 12 | 89 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +rl lp +++e+ ++ ++ l+++de+gr+W+++++ + ++++ l + W +Fv+++gL +gD++v+ ++e SapurV1A.0618s0180.1.p 14 E-RRLLLPENCLEDLRSD--LEVNLKFKDEEGRVWTFRCRASPGGRSkPALYGDWFSFVREKGLVVGDVIVIIS--DKE 87 3.469*******999766..7899***************775555557999********************983..333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.418 | 2 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-15 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.69E-14 | 4 | 88 | No hit | No description |
SMART | SM01019 | 0.0014 | 4 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.88E-14 | 5 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-11 | 15 | 87 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MENITKKLNI TDVERRLLLP ENCLEDLRSD LEVNLKFKDE EGRVWTFRCR ASPGGRSKPA 60 LYGDWFSFVR EKGLVVGDVI VIISDKEKNI SAGGCFKIKI KKAASKQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002452.1 | 9e-35 | PREDICTED: double-stranded RNA-binding protein 3-like | ||||
TrEMBL | A0A2K2AYG5 | 2e-52 | A0A2K2AYG5_POPTR; B3 family protein | ||||
STRING | POPTR_0004s22980.1 | 4e-52 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13561 | 5 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 6e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0180.1.p |