PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13583.4 Da PI: 10.5479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 5 | 95 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvv 81 f k l s + +s+rl++pk + ++ g+++ + + ++d++ ++W++kl++ +++ v+t+ W +Fv+++gL++gD +v SapurV1A.0618s0160.1.p 5 FTKLL--SPTDTSHRLTIPKANFGDFefpTGQHA--TNIEFTDTTEQQWTFKLSIrrNNH--PnprPVFTGQWIRFVREKGLRAGDRIV 87 67778..88888999*****99989988755544..469**************8854333..34589********************** PP EEE-SSSE CS B3 82 Fkldgrse 89 F+ + + + SapurV1A.0618s0160.1.p 88 FSKKTEGD 95 **443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-20 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.16E-17 | 3 | 105 | No hit | No description |
PROSITE profile | PS50863 | 9.855 | 3 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.72E-16 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-11 | 5 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-8 | 5 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEHLFTKLLS PTDTSHRLTI PKANFGDFEF PTGQHATNIE FTDTTEQQWT FKLSIRRNNH 60 PNPRPVFTGQ WIRFVREKGL RAGDRIVFSK KTEGDGVLYR IRAEREIFHL WINVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 1e-57 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 9e-57 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 3e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0160.1.p |