PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13589.3 Da PI: 6.7938 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 3e-12 | 7 | 96 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 vl s v +++rl++p + ++ g+++ + + +d+ ++W++kl++r++ + v+t+ W +Fv ++ L++gD +vF++ SapurV1A.0618s0130.1.p 7 TRVL--SQVDTTHRLTVPMVNLGDFefpAGQHA--INIEATDTIEQQWTFKLSIRRNNNPnpkPVFTGQWIQFVTEKSLRAGDRIVFSR 91 5556..889999999999999988887766644..4688889999*******995554444589************************8 PP -SSSE CS B3 85 dgrse 89 ++ ++ SapurV1A.0618s0130.1.p 92 QQAEG 96 76644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-16 | 3 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.529 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.16E-12 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.53E-15 | 4 | 107 | No hit | No description |
Pfam | PF02362 | 1.2E-8 | 8 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MDEHLFTRVL SQVDTTHRLT VPMVNLGDFE FPAGQHAINI EATDTIEQQW TFKLSIRRNN 60 NPNPKPVFTG QWIQFVTEKS LRAGDRIVFS RQQAEGDGVQ YRIRAEREIF NCWVNVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 4e-62 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 8e-62 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 2e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0130.1.p |