PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13794.7 Da PI: 10.6998 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 6 | 96 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 f k l s + +++rl++p + e+ g+++ + + +d++ ++W ++l++ ++++++ v+t+ W +Fvk++gL++gD +vF+ SapurV1A.0618s0120.1.p 6 FTKLL--SPTDTTHRLTVPMANLGEFefpTGQHA--INIEATDTTEQQWIFRLSIrrNNNPNSrPVFTGRWIRFVKEKGLRAGDRIVFS 90 67777..77788899********99987755544..5688889**********88775555557************************* PP E-SSSE CS B3 84 ldgrse 89 +++ ++ SapurV1A.0618s0120.1.p 91 RQQAEG 96 876644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-15 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.051 | 4 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.51E-16 | 4 | 107 | No hit | No description |
SMART | SM01019 | 0.0012 | 6 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-10 | 6 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MEQHCFTKLL SPTDTTHRLT VPMANLGEFE FPTGQHAINI EATDTTEQQW IFRLSIRRNN 60 NPNSRPVFTG RWIRFVKEKG LRAGDRIVFS RQQAEGDGVQ YRIRAERKIF KYWVNVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 3e-64 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 2e-63 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 5e-64 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 6e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0120.1.p |