PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13930.9 Da    PI: 11.937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14697190
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
                            f k l  s v +++rl++pk  + ++    g++   + +   d++ ++W+++l++r++ +     v+t+ W +Fv+++gL+ gD +vF+
  SapurV1A.0618s0100.1.p  6 FTKLL--SRVDTTHRLTVPKANLGDFefpTGQH--AINIEAADTTQQQWTFRLSIRRNNNPnprPVFTGQWIRFVREKGLRKGDRIVFS 90
                            77888..9999************9997775554..45688889999*******994444444579************************ PP

                            E-SSSEE CS
                      B3 84 ldgrsef 90
                            ++++++ 
  SapurV1A.0618s0100.1.p 91 RQQTEGD 97
                            8876444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4744107IPR003340B3 DNA binding domain
CDDcd100171.17E-114107No hitNo description
Gene3DG3DSA:2.40.330.105.8E-17499IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-10697IPR003340B3 DNA binding domain
SMARTSM010190.00956109IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-13696IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MVQRRFTKLL SRVDTTHRLT VPKANLGDFE FPTGQHAINI EAADTTQQQW TFRLSIRRNN  60
NPNPRPVFTG QWIRFVREKG LRKGDRIVFS RQQTEGDGVQ YRIRAERKIF KYWVNVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.11e-62PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH53e-60A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.11e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-06B3 family protein