PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 101aa MW: 11346.2 Da PI: 9.8537 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.8 | 1.2e-10 | 4 | 96 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l +v +++lvlp++ ++ g++ + ++ +g + +v++ ++k gr++lt+GW e ++ +L++gD+v ++ + SapurV1A.0618s0080.1.p 4 FIKKL--TSVDLERQLVLPNNTKTDAlqfRGPEDIVIPIM-FGHDGVKVDVRC--SRKEGRHILTEGWVEIARNLRLNAGDVVALR--K 85 78888..445555569***998555566655544433344.45799*******..*******************************..4 PP SSEE..EEEEE CS B3 87 rsefelvvkvf 97 ++++++++ v+ SapurV1A.0618s0080.1.p 86 EDNGRYKMIVR 96 45665555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.84E-11 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.34E-9 | 3 | 97 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-11 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.3E-8 | 4 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MEIFIKKLTS VDLERQLVLP NNTKTDALQF RGPEDIVIPI MFGHDGVKVD VRCSRKEGRH 60 ILTEGWVEIA RNLRLNAGDV VALRKEDNGR YKMIVRSGSA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3N7EV09 | 2e-34 | A0A3N7EV09_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23030.1 | 1e-29 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0080.1.p |