PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0618s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13401.4 Da PI: 8.4593 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34 | 5e-11 | 10 | 101 | 8 | 94 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.s 88 s + ++rl +p + ++++++++ +++ + +e ++ ++W+++l++r+ + v+t+ W +Fv+++gLk+gD + + +++ + SapurV1A.0618s0050.1.p 10 SRTDIECRLAFPTSSLSAFSMPE-GETAVYFEATDTieKKWNFRLSIRGENDPytkPVITGDWLQFVRDKGLKVGDKMFLWREEGaT 95 55566799********9997765.55688888877777*******9855544444689******************98877554445 PP EE..EE CS B3 89 efelvv 94 + +++v SapurV1A.0618s0050.1.p 96 GVRYTV 101 555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.868 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-12 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-4 | 5 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.45E-12 | 6 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-14 | 7 | 105 | No hit | No description |
Pfam | PF02362 | 9.6E-8 | 13 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEVLMEKILS RTDIECRLAF PTSSLSAFSM PEGETAVYFE ATDTIEKKWN FRLSIRGEND 60 PYTKPVITGD WLQFVRDKGL KVGDKMFLWR EEGATGVRYT VRAERKIFRV WANVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0618s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 2e-37 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A3N7G753 | 8e-66 | A0A3N7G753_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 3e-36 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0618s0050.1.p |