PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0618s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 297aa    MW: 34009.7 Da    PI: 6.4061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0618s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.14e-072448123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                            ++Cp   Cgk Fs   nL++H++tH
  SapurV1A.0618s0030.1.p 24 FVCPheGCGKAFSLDFNLRSHMKTH 48
                            89**********************9 PP
2zf-C2H214.97.9e-055478123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                            + Cp   Cgk++ + + Lk+Hi +H
  SapurV1A.0618s0030.1.p 54 HICPhpECGKRYAHEYKLKNHIASH 78
                            679999*****************96 PP
3zf-C2H213.40.00022152177123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                             y Cp   C k + + + Lk H+r+ H
  SapurV1A.0618s0030.1.p 152 YICPyeGCEKDYIHEYKLKLHLRReH 177
                             89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-14558No hitNo description
Gene3DG3DSA:3.30.160.603.9E-20850IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.6952453IPR007087Zinc finger, C2H2
SMARTSM003553.1E-42448IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802648IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-75178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.2655483IPR007087Zinc finger, C2H2
SMARTSM003550.0535478IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805679IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-5147175No hitNo description
Gene3DG3DSA:3.30.160.603.8E-9150175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954152185IPR007087Zinc finger, C2H2
SMARTSM003550.016152177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLQKFLDSSK LKRHFLIHTG ERDFVCPHEG CGKAFSLDFN LRSHMKTHSQ ENYHICPHPE  60
CGKRYAHEYK LKNHIASHHE KHLLTSIFVN KVLFVWFTLA KTKCTALQCW IATRNMNPTP  120
EVVKYTTPPE RTPKNAKTPS VVYGSASSDR PYICPYEGCE KDYIHEYKLK LHLRREHPGH  180
IGDENAENGP PNADNELDEA SDQDAYGGKR VNGKSQKQSR SKPNLKMPPG KIRQRKGSSP  240
SPATLNVVKK PWTIKDETCE EEEDSEETEE EDRDNAEDGW RYGGNEDDDE ETEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-2137842117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0618s0030.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485071e-155EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385011.11e-152zinc finger transcription factor YY1
SwissprotQ2V3L37e-92YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2K2AYI31e-152A0A2K2AYI3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23050.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56493354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-90C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]