PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0616s0110.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 424aa MW: 47396.8 Da PI: 8.7436 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7e-25 | 117 | 160 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e SapurV1A.0616s0110.2.p 117 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 160 79***************************************997 PP | |||||||
2 | QLQ | 59.6 | 9.3e-21 | 48 | 82 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+ SapurV1A.0616s0110.2.p 48 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 82 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 47 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-15 | 48 | 81 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.741 | 48 | 83 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.888 | 117 | 161 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-20 | 118 | 160 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MYRRFCRPMV PEINIPTLLS KPFSVHNNTH SLSTPHGDMI MSGGNRFPFT ASQWQELEHQ 60 ALIYKYMVSG IPIPPDLLFT IKRSGCLDSS LSSKLFPRQP PHFSWSCFQM GLGRKIDPEP 120 GRCRRTDGKK WRCSKEAYPD SKYCEKHMHR GKNRSRKPVE VATQSTTAPN VSSITRNHSN 180 NSLLTTSSHS LSLLLPETHH QNHLHYPAPS GYHAHPNHQF LSSSRPLGIG LSPHENSTHL 240 LLDSGGPSLS NTDYRNRNVY GLKEEVDEHA FFSESSGSMR SLSGSSLDDA SQLSPLTMNS 300 SPSNTNSSKQ RSLSGLHNEY SYLQLQSLSD HDTPKQQKQY QHSYLLGSSN IGSLGPIEME 360 KEKSQKTVHR FFDEWPPENK DSWLDLADKS SNSASVSTTG LSMSIPSSHD FLPIFSSRTN 420 NDG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0616s0110.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-132 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045984.1 | 0.0 | PREDICTED: growth-regulating factor 1 isoform X3 | ||||
TrEMBL | A0A2K2A2B4 | 0.0 | A0A2K2A2B4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s14560.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 8e-57 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0616s0110.2.p |