PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0608s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 686aa    MW: 76210.4 Da    PI: 6.7191
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0608s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16329388155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.0608s0160.1.p 329 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 388
                             78*******************988886678446*************************98 PP
2AP245.61.8e-14433482355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0608s0160.1.p 433 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 482
                             9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-13329388IPR001471AP2/ERF domain
CDDcd000185.10E-20329396No hitNo description
SuperFamilySSF541717.19E-15329396IPR016177DNA-binding domain
SMARTSM003809.5E-27330402IPR001471AP2/ERF domain
PROSITE profilePS5103218.413330396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14330396IPR001471AP2/ERF domain
PRINTSPR003675.5E-6331342IPR001471AP2/ERF domain
CDDcd000181.61E-24431492No hitNo description
SuperFamilySSF541713.01E-17431491IPR016177DNA-binding domain
SMARTSM003808.7E-34432496IPR001471AP2/ERF domain
PROSITE profilePS5103219.085432490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-18432490IPR001471AP2/ERF domain
PfamPF008473.0E-9433482IPR001471AP2/ERF domain
PRINTSPR003675.5E-6472492IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKSINNDDSN NNHNADWLGF SLSPQMNMEV PSGTDHHQQT QSASASVPAA IPTNLFHSQL  60
PHLNSGIYYG VDGENGGFYS PLHFMPLKSD GSLCMMDSHT RTRPQATMVT TSTPKLEDFF  120
VGANMGTHHY ESNDREAMAV NLDSSPPMYY HHDTDHEPNN QICPNHLDLN PRQQQHHHIQ  180
VQQYPYYSNF RNNEMLIGGE DAKQMTQASD CNLLLPNMGD DGITGMKNWV STNYQSNHAM  240
EQKMLRCMVE NGGESGPNIS AMTYGDLQCL SLSMSPGSQS SCVSGSSHQI SPSVTDCAAM  300
ETKKRGTEKV DQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK  360
GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINSPLENY QKEIEEMKNM TRQEYVAHLR  420
RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  480
RGVSAVTNFD ITRYDVERIM ASNTLLAGEL ARRNKDIGPC DDAATNQNPS THNSNGESMP  540
PSSQKSENES DWKMFYQSSL QQDHKASNGV DNYKTQAFSL SHENAIADDS MISIHQQKVE  600
DSAKMGTHMS NASSLVTSLS SSREGSPDRA SLPMLFGMPP SAASKFTSPN CDVNSWIPAE  660
AASSQLRPAA VSLPHMPMLA AWTDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0608s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380824.20.0AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A2K1ZM010.0A0A2K1ZM01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein