PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0608s0150.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 449aa MW: 48657.4 Da PI: 9.3347 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 8.9e-24 | 81 | 125 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e SapurV1A.0608s0150.2.p 81 DQEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 125 689***************************************985 PP | |||||||
2 | QLQ | 58.3 | 2.3e-20 | 10 | 46 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ a++PvP++L+ +++k SapurV1A.0608s0150.2.p 10 GPFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKK 46 59******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-12 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.49 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-14 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.796 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-20 | 83 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MHGAFTGVRG PFTPSQWMEL EHQALIYKYI TARVPVPSNL IIPLKKSLNL YGLPGSSAGS 60 FPPSSLGWGT FHLGYPGNNT DQEPGRCRRT DGKKWRCSRD AVADQKYCER HINRGRHRSR 120 KPVEGQTGHA ATGTASSKVV SMSNSISTSV TTSGAASNSI VITQQQLKKL LPGAASRSSA 180 VARVNGAQDA QRVSMMSSTI NRRSDEPTFC IPKQDILIEQ CSQTEFGLVS YDSLLNPSQK 240 SSYISSKPYE SFLNFSDEES HDQHPLRQFI DDWPKDQSNR SVISWPEELK PDCTLLSMSI 300 PMASSGFSSP SSSPMREKLA LSPLRLSREI HPMQTGLRVS DEHNESSQKQ ANWIPISWGT 360 SIGGPLGEVL TTSTSHVDSC KSSPALNLSR EGWDGSLQVG SSPTGVLQKS TFRSLSNSSS 420 GSSPRAGSKK KNESAGLYED MAGSIIVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0608s0150.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU282694 | 1e-155 | GU282694.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU282695 | 1e-155 | GU282695.1 Populus balsamifera isolate HAY07 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU282696 | 1e-155 | GU282696.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU282697 | 1e-155 | GU282697.1 Populus balsamifera isolate MGR10 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU282698 | 1e-155 | GU282698.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU282699 | 1e-155 | GU282699.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU282700 | 1e-155 | GU282700.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU282701 | 1e-155 | GU282701.1 Populus balsamifera isolate STL13 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU282702 | 1e-155 | GU282702.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU282703 | 1e-155 | GU282703.1 Populus balsamifera isolate INU03 haplotype B unknown protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310328.3 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | O81001 | 1e-102 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A2K1ZLZ8 | 0.0 | A0A2K1ZLZ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s14720.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-83 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0608s0150.2.p |
Publications ? help Back to Top | |||
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