PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0606s0090.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TALE

Protein Properties

Length: 322aa MW: 36352.5 Da PI: 5.1651

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0606s0090.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3e-09	255	287	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+++L++ +gL+++q+ +WF N+R ++ SapurV1A.0606s0090.2.p 255 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 287 8*****************************885 PP
2	ELK	30.3	9.4e-11	208	228	2	22
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK +L+rKYsg+L +L++EF+ SapurV1A.0606s0090.2.p 208 LKGMLMRKYSGHLRNLRKEFL 228 9*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.0E-20	65	109	IPR005540	KNOX1
Pfam	PF03790	3.1E-20	66	105	IPR005540	KNOX1
SMART	SM01256	3.7E-26	112	163	IPR005541	KNOX2
Pfam	PF03791	7.1E-25	115	162	IPR005541	KNOX2
PROSITE profile	PS51213	9.917	207	227	IPR005539	ELK domain
SMART	SM01188	1.1E-5	207	228	IPR005539	ELK domain
Pfam	PF03789	5.8E-7	208	228	IPR005539	ELK domain
PROSITE profile	PS50071	12.131	227	290	IPR001356	Homeobox domain
SMART	SM00389	9.3E-13	229	294	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-18	229	300	IPR009057	Homeodomain-like
CDD	cd00086	5.65E-14	231	291	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-27	232	292	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-16	247	286	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	265	288	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEEFYRFNPT FFSSSPNDIV RPENLPAANF SDATTSTPTE FHSQASSFLQ AGHGHREVTG 60 SDMYDAIKTQ IANHPRYPDL VSAHLECQKV GAPPEMVSLL EAIGRGNYKI NTCYEIGADP 120 ELDEFMESYC EVLHRYKEEL SKPFDEAATF LSSIESQLSS LCKGTLTKIF DYGSDEPAGT 180 SEEELSCGEV EAPESQETTS VGSHEQNLKG MLMRKYSGHL RNLRKEFLKN RKKGKLPKDA 240 RTMLLDWWNH HSRWPYPTEE EKAKLSEITG LDQKQINNWF INQRKRHWKP SEDMRFTRMD 300 GVSGDPGGAL CYGFAGDDIG I*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00670	PBM	Transfer from GRMZM2G087741	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0606s0090.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209045	1e-100	AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038923.1	0.0	PREDICTED: homeobox protein knotted-1-like 1
Swissprot	Q9FP29	2e-90	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A2K2AAB8	0.0	A0A2K2AAB8_POPTR; Uncharacterized protein
STRING	POPTR_0005s01720.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	3e-81	KNOTTED-like from Arabidopsis thaliana 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0606s0090.2.p

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]