PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0606s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 323aa MW: 36423.6 Da PI: 5.1651 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3.1e-09 | 256 | 288 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+++L++ +gL+++q+ +WF N+R ++ SapurV1A.0606s0090.1.p 256 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 288 8*****************************885 PP | |||||||
2 | ELK | 30.3 | 9.5e-11 | 209 | 229 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK +L+rKYsg+L +L++EF+ SapurV1A.0606s0090.1.p 209 LKGMLMRKYSGHLRNLRKEFL 229 9*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-20 | 65 | 109 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.1E-20 | 66 | 105 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.7E-26 | 112 | 163 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.2E-25 | 115 | 162 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.917 | 208 | 228 | IPR005539 | ELK domain |
SMART | SM01188 | 1.1E-5 | 208 | 229 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.8E-7 | 209 | 229 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.131 | 228 | 291 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-18 | 230 | 301 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.3E-13 | 230 | 295 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.33E-14 | 232 | 292 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 233 | 293 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-16 | 248 | 287 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 266 | 289 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEEFYRFNPT FFSSSPNDIV RPENLPAANF SDATTSTPTE FHSQASSFLQ AGHGHREVTG 60 SDMYDAIKTQ IANHPRYPDL VSAHLECQKV GAPPEMVSLL EAIGRGNYKI NTCYEIGADP 120 ELDEFMESYC EVLHRYKEEL SKPFDEAATF LSSIESQLSS LCKGTLTKIF DYGSADEPAG 180 TSEEELSCGE VEAPESQETT SVGSHEQNLK GMLMRKYSGH LRNLRKEFLK NRKKGKLPKD 240 ARTMLLDWWN HHSRWPYPTE EEKAKLSEIT GLDQKQINNW FINQRKRHWK PSEDMRFTRM 300 DGVSGDPGGA LCYGFAGDDI GI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0606s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209045 | 1e-100 | AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456691.1 | 0.0 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | Q9FP29 | 3e-90 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A3N7FTU0 | 0.0 | A0A3N7FTU0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s01720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 4e-81 | KNOTTED-like from Arabidopsis thaliana 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0606s0090.1.p |
Publications ? help Back to Top | |||
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