PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0602s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 446aa    MW: 48434.4 Da    PI: 6.2951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0602s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31233291259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  SapurV1A.0602s0100.1.p 233 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 291
                             699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787227293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30230293IPR003657WRKY domain
SuperFamilySSF1182903.66E-26231293IPR003657WRKY domain
SMARTSM007741.4E-37232292IPR003657WRKY domain
PfamPF031069.4E-26234291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDYQGDLTDI LRATGGAVGQ SDVPVSNWEF PFDPSSAMGE RRGNLFGDPF CNTRDPLLHE  60
LNVAAGSSYF SSQNSADHML SATASVDRDH TGSFVGANRA TTSSSSNILA HHKVFEDHGM  120
HKAATPLPAP CNIFSRIQIS PNNQTKLPVS PCNSPVIATG SSPRGFKPSA MVSSDIITVN  180
NSKGCLMENT GQVQISSPRN MGIKRRKSQA KKVVCIPAPA AANSRPGGEV VPSDLWAWRK  240
YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA  300
GSTRSQPLKS TAVSKNSTGS QSQKAGNTKE EQKESSNETL SPTNIEGGRS TVSASVKEEF  360
DDNDKQMEME DTDFSEGFSH SYKPSMPDQS DQDFFAELGE IDADPLELLF THEFNGDEQK  420
ESKDLDPFSI FDWSGDTFGE AKKGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25207294280Disease resistance protein RRS1
5w3x_D2e-25207294280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0602s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494240.0AC149424.1 Populus trichocarpa clone Pop1-011N15, complete sequence.
GenBankAC1494250.0AC149425.1 Populus trichocarpa clone Pop1-041F22, complete sequence.
GenBankAC1494260.0AC149426.1 Populus trichocarpa clone Pop1-053A03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005315.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLB9GGH30.0B9GGH3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s46490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-106WRKY DNA-binding protein 14