PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0598s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 339aa    MW: 37830.6 Da    PI: 8.2107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0598s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-162875148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W +eEdell+ ++k+ G g+W+t ++++g+ R++k+c++rw +yl
  SapurV1A.0598s0010.1.p 28 KGPWKPEEDELLASYIKKEGEGRWRTLPKRVGLARCGKSCRLRWMNYL 75
                            79********************************************97 PP
2Myb_DNA-binding44.53.7e-1486124646
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++
  SapurV1A.0598s0010.1.p  86 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 124
                             89***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.442379IPR017930Myb domain
SuperFamilySSF466894.21E-2825122IPR009057Homeodomain-like
SMARTSM007173.9E-122777IPR001005SANT/Myb domain
PfamPF002495.5E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-212982IPR009057Homeodomain-like
CDDcd001677.10E-113075No hitNo description
PROSITE profilePS5129418.90780130IPR017930Myb domain
SMARTSM007177.1E-1380128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2383131IPR009057Homeodomain-like
CDDcd001676.82E-1186126No hitNo description
PfamPF002496.5E-1386124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRNPSSTTST RSKITVPTPC CSKVGIKKGP WKPEEDELLA SYIKKEGEGR WRTLPKRVGL  60
ARCGKSCRLR WMNYLRPSVK RGHIAPDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN  120
YWNTSLSKKL ISQGIDPRTH RPLNPNPDSS EMANVPVQNC NPKSPPVLDE NGRVYRTVAT  180
RVSENFTAPP NLDDQFPSQV AADATEYWPN RDGFNMGSLQ SGYDQGKTDE DLIEDIGNED  240
TLSSFLDSLL NDNVFVYQQR QQLQQQNMFG LSSKLVVSSS QILSHGNIWE AQVSPPMAAF  300
GDKAVDGAPS NSLPVLTHQP APLHVHKENQ TDVINGMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26281307108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0598s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446880.10.0transcription repressor MYB5
TrEMBLA0A2K1WP060.0A0A2K1WP06_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-78myb domain protein 5