PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0583s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 397aa    MW: 44771 Da    PI: 6.8443
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0583s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1294.7e-401272803134
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceae 76 
                              k+drhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qak +ik+l +              ++ss sece  
  SapurV1A.0583s0060.1.p 127 SKRDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLSFDKASKTVEWLLVQAKSEIKKLSSGsphmsysgsagtkNASSTSECEML 213
                             69**********************************************************999999999999987655555777333 PP

                     TCP  77 sssssasnsssg........kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                             s+ +++ + + +        + +++++   ++++++++  + +akesr+karararert+ek + + 
  SapurV1A.0583s0060.1.p 214 SEMNAETTTKGRnvsnkgrsSPCAKKErRARRPTSRKTPLNPFAKESREKARARARERTKEKLCSRR 280
                             333333322222344556556666666455555555666677888*******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-43127277IPR005333Transcription factor, TCP
PROSITE profilePS5136932.305128186IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397258275IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFPLSDNGND AISCSDQQAY NMPLFSDIGS YPKQDVPPPF SFCLAPSPFI PCDQQEFEDY  60
PIFLQQNCDL FFPEQPLRAA ATSTNLSQST VANNMVDSNK SDVIELTEIC DKKFHSSTDQ  120
ILRKRSSKRD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLSFDKASK TVEWLLVQAK  180
SEIKKLSSGS PHMSYSGSAG TKNASSTSEC EMLSEMNAET TTKGRNVSNK GRSSPCAKKE  240
RRARRPTSRK TPLNPFAKES REKARARARE RTKEKLCSRR IDELKFSEES SNNELNQFAG  300
CWDTPLETGD QHSGIQNFNP SLEVQLAAEV DAAIYHEQEK LGTTEGMIDE ELVIMSKYWS  360
PSFPNHLYNT GTPQEHQFSD LQYKTWDQAC TIGSMC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0583s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437904.10.0uncharacterized protein LOC7487090
TrEMBLA0A2K1Y9K20.0A0A2K1Y9K2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-19TCP domain protein 12