PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0574s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SRS | ||||||||
Protein Properties | Length: 285aa MW: 30686 Da PI: 8.327 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 180.2 | 8.8e-56 | 81 | 238 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 +C+dCGn+akk+C+++RCRtCCksr++dC+th+kstWv+a+ rrer s+a++ kr+re+ +++++ + st+ + SapurV1A.0574s0270.1.p 81 RACRDCGNRAKKECQYRRCRTCCKSREYDCTTHMKSTWVSASSRRERLGCSGGGDSSASSGGGCVGGKRPRENATTTSN-SFSTSNN 166 58**********************************************9999999999888888999999987333333.3333334 PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +a ++ +++t s lP +v+ +avfrcvrv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e SapurV1A.0574s0270.1.p 167 NAAASVNFDTGSsyqdagfklsLPVQVREPAVFRCVRVTAINSGEAEVAYQAKVNISGHVFKGVLYDQGIDE 238 4444445555557888999999***********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.4E-53 | 81 | 237 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.6E-23 | 83 | 124 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.4E-24 | 189 | 236 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLGLHNILFI APPPSPFHHH QTPQVPSAHH IANTNDQCNI ADNQESWATL NKYQQKPCFL 60 KTGDLNVAGE DDTGRNIGPA RACRDCGNRA KKECQYRRCR TCCKSREYDC TTHMKSTWVS 120 ASSRRERLGC SGGGDSSASS GGGCVGGKRP RENATTTSNS FSTSNNNAAA SVNFDTGSSY 180 QDAGFKLSLP VQVREPAVFR CVRVTAINSG EAEVAYQAKV NISGHVFKGV LYDQGIDEKN 240 LFPCISKLQS GERTRDSTSS IVEPSAAYAA TGNHRLLEGT NCTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0574s0270.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000571.1 | 1e-165 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 | ||||
Swissprot | Q94CK9 | 1e-46 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2K2BRG1 | 1e-162 | A0A2K2BRG1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s06500.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-46 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0574s0270.1.p |
Publications ? help Back to Top | |||
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