PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0569s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SRS

Protein Properties

Length: 333aa MW: 36028.9 Da PI: 7.4171

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0569s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219	1e-67	118	262	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 ++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqql ++++++ + + +++kr+re+ +s+l++t+ SapurV1A.0569s0030.1.p 118 SSISCQDCGNQAKKDCIHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLDLLQQQQQLQIRGENPKRQREN---PNSSLACTR 201 6789*****************************************************9999999999999985...999** PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l+++ s le ++P+evss+a+frcvr+s++d++ e laYqtav+igGhvfkGiLyd+G+++ SapurV1A.0569s0030.1.p 202 LANNMS--GLELGNFPSEVSSPALFRCVRMSGIDES-EMLAYQTAVNIGGHVFKGILYDHGPDS 262 988765..688999***************986.579********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.4E-64	119	261	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.8E-28	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.6E-24	214	260	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAGLFSLGRG GSSSNNQEDQ QNNNNPPTEI PQESWFWYKS EDIPYKSFEL WQQQQQQHQQ 60 LLHQRHQNPQ QDLYSSAAGL GVGPSRTSIN ISDESSSRSA AEAFMMIRPG GSGTGGASSI 120 SCQDCGNQAK KDCIHMRCRT CCKSRGFDCQ THVKSTWVPA SKRRERQQQL DLLQQQQQLQ 180 IRGENPKRQR ENPNSSLACT RLANNMSGLE LGNFPSEVSS PALFRCVRMS GIDESEMLAY 240 QTAVNIGGHV FKGILYDHGP DSNYMAPGET SSGGGGAQPL NLIIITAGTA TGGGGGVTVA 300 STTAAFLDPS SLYPAPLNTF MAGTQFFPNP RS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0569s0030.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380784.1	1e-166	protein SHI RELATED SEQUENCE 1 isoform X1
Swissprot	Q9SD40	1e-105	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	U5G8I9	1e-164	U5G8I9_POPTR; Uncharacterized protein
STRING	POPTR_0007s13610.1	1e-165	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-77	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	SapurV1A.0569s0030.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]