PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0568s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 337aa MW: 36952.9 Da PI: 7.8997 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.6e-25 | 97 | 141 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ SapurV1A.0568s0060.1.p 97 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 141 79****************************************986 PP | |||||||
2 | QLQ | 65.1 | 1.7e-22 | 35 | 71 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l+yKy++a++PvPp+L+++iq+ SapurV1A.0568s0060.1.p 35 SPFTVSQWQELEHQALIYKYMVAGLPVPPDLVLPIQR 71 89*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.2E-13 | 35 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.507 | 36 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.1E-16 | 36 | 70 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 97 | 141 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 98 | 140 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MNSGGAGGVG VEGGGCGASG MTAGGMGTGA MTMRSPFTVS QWQELEHQAL IYKYMVAGLP 60 VPPDLVLPIQ RSYESISHRF FHHPTMSYCT FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD 120 SKYCERHMHR GRNRSRKPVE SQTMTQSSST VTPLTATGSS SGTGSFQNLP LHSYSNPQGT 180 GSGTNQSHYH MNSIPYGIPT KDYRYLQGLK PEGGEHSFLS EASGNNKGVQ MDTQLDNAWS 240 LMQSRVSSFP TEKTIENSML QNSQPQLSIF SSDFTAKQDG HSLRPFFDEW PKNRETWSGL 300 EDDSSSHTSF STTQLSISIP MASSDFSTSC RSPQDN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0568s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044430.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Swissprot | Q6AWY6 | 9e-91 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A1L6K565 | 0.0 | A0A1L6K565_POPTO; Growth-regulating factor 5 | ||||
STRING | cassava4.1_011724m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-46 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0568s0060.1.p |