PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0566s0220.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 364aa MW: 40416.9 Da PI: 9.7134

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0566s0220.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.9	5.4e-29	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF +ave+LGG e AtPk +l+ m+ kgL+++hvkSHLQ+YR+ SapurV1A.0566s0220.1.p 62 PRLRWTPDLHLRFAQAVERLGGYEMATPKLVLQQMNTKGLSIAHVKSHLQMYRS 115 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-27	58	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.333	58	118	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-13	60	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-21	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-9	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MKLGGDQKND GLMMDASGKR KDEEGDGESK TKTSASSSNS IVDESEKASS SGVRPYVRSK 60 VPRLRWTPDL HLRFAQAVER LGGYEMATPK LVLQQMNTKG LSIAHVKSHL QMYRSKKIDD 120 QGQVINSRGG LIGSSDYFSL NFWQHSLLPN FDHNHSSNFR SRSVSRSTGH GNWIASPSVL 180 VPDSMTIRSG AGFYNSISER INVEIGSSTK HGPFHTCKNP TFNDHRRKLK QEFLDTESHR 240 SMFSGNSIRG QVSSPTKQPY FAAQISKRGG DTNESISSET KWSFNAEKCS QTKRKADDLD 300 LSLTLFTESK EKEARRSLSW DEEDEGSDLS LSLSSTSTKE SNSIYLSMPS KHPKLTSTLD 360 LTM*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MKLGGDQKND GLMMDASGKR KDEEGDGESK TKTSASSSNS IVDESEKASS SGVRPYVRSK  60
VPRLRWTPDL HLRFAQAVER LGGYEMATPK LVLQQMNTKG LSIAHVKSHL QMYRSKKIDD  120
QGQVINSRGG LIGSSDYFSL NFWQHSLLPN FDHNHSSNFR SRSVSRSTGH GNWIASPSVL  180
VPDSMTIRSG AGFYNSISER INVEIGSSTK HGPFHTCKNP TFNDHRRKLK QEFLDTESHR  240
SMFSGNSIRG QVSSPTKQPY FAAQISKRGG DTNESISSET KWSFNAEKCS QTKRKADDLD  300
LSLTLFTESK EKEARRSLSW DEEDEGSDLS LSLSSTSTKE SNSIYLSMPS KHPKLTSTLD  360
LTM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-15	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-15	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-15	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-15	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0566s0220.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299997.1	0.0	probable transcription factor KAN2 isoform X2
TrEMBL	B9GGQ9	0.0	B9GGQ9_POPTR; Uncharacterized protein
STRING	POPTR_0001s28690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16555	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0566s0220.1.p